Images information

minc_modify_header

Inserts or removes attributes from the header of a MINC file. MincModifyHeaderManPage
mincedit

Edits a MINC file header. MinceditManPage
mincgetdims

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mincheader

Prints out header information for a MINC file. MincheaderManPage
minchistory

Prints out value of the history variable of a MINC file. MinchistoryExamples
mincinfo

Print out specified information about a MINC file. MincinfoManPage
voxeltoworld

Convert coordinates from world to voxel. VoxeltoworldManPage
worldtovoxel

Convert coordinates from voxel to world. VoxeltoworldManPage

resize an image

autocrop

Extracts and manipulates bounds of a MINC file. AutocropManPage
mincbbox

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mincextract

Dumps a hyperslab of MINC file data. MincextractManPage
mincresample

Resamples a MINC file along new spatial dimensions. MincresampleManPage
mincreshape

Cuts a hyperslab out of a MINC file (with dimension re-ordering). MincreshapeManPage

Mathematical tools

mincaverage

Takes MINC files and averages them together. MincAverageManPage
minccalc

Performs complex math operations on MINC files. MinccalcManPage,
mincdiff

Reports differences between MINC files. MincdiffManPage,
mincmath

Performs simple math operations on MINC files. MincmathManPage
mincstats

Calculate simple statistics across voxels of a MINC file. MincstatsManPage
mincmorph

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Processing tools

classify_clean

Classifies stereotaxic MINC volumes. ClassifyCleanManPage, ClassifyExamples
cortical_surface

Creates a polygonal cortical surface from a classified volume and a given threshold. CorticalSurfaceExamples
glim_image

Runs general linear models across voxels of multiple MINC images. GlimImageManPage, GlimImageExamples
mincbet

Brain extraction tool, to generate mask or scalped brain. MincbetManPage?
mincblob

For non-linear grid analysis. MincblobManPage MincblobExamples?.
mincblur

Blurs an input volume using a Gaussian bluring kernel of user-defined width. MincblurManPage. MincblurExamples?.
mincchamfer

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minccconcat

Concatenates MINC files along a specific dimension. MincconcatManPage,
minccopy

Copies a MINC file. MinccopyManPage,
mincdti

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mincdti_maps

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mincexpand

Expands a compressed MINC file, if necessary. MincexpandManPage,
mincextentslist

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mincfbbox

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minclookup

Performs lookup table conversions on MINC files. MinclookupManPage
mincmakescalar

Converts vector MINC files to scalar. MincmakescalarManPage
mincmakevector

Converts a list of scalar MINC files into one vector file. MincmakevectorManPage
mincmask

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mincpik

Generates images from MINC volumes using the Imagemagick "convert" utility. MincPikManPage, MincPikExamples?
minctracc

Estimates the spatial transformation required to register two volumes together. MinctraccManPage, MinctraccExamples, nlfit_smr
mincview

View a MINC file. MincviewManPage.
mincwindow

Limits voxel values to a given range. MincwindowManPage.
mritoself

Intra-subject registration of two volumetric data sets. MritoselfManPage
mritotal

Performs multi-scale fitting of a normal human brain to a standard model. MritotalManPage.
nu_correct

Most commonly invoked form of N3, the Non-parametric Non-uniform Intensity Normalization tool for correcting non-uniformity in MRI image data. WikiNuCorrectFaq, N3 FAQ, N3ManPage?, N3Examples?
volregrid

VolregridManPage, VolregridExamples.
smooth_mask

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Xfms tools

param2xfm

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xfm2param

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xfmconcat

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xfminvert

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xfmtool

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rand_param

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There is also some tools available to convert MINC files into other formats: MincConvertToolsGuide?

If you have any questions you can send an email to minc-users@bic.mni.mcgill.ca